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Will I be disqualified if I keep checking in code after the December 1st due date? What's the best way for me to continue working on the code/game when the GameJam has finished?

(+1)

I asked this & many other similar questions here ::

... hopefully @LeeReilly will respond soon ... 

Since the code isn't being judged, you're welcome to keep pushing updates to the GitHub repository. However, please hold off publishing any changes to the itch.io page until after the judging period ends. I'll add this to the FAQ - thanks!