I've decided to make an in-depth video on this situation. It seems like there are certain limits where specific things start getting bugged. I noticed everything in my chests about 6-7 foundation blocks away from spawn were all gone. And everything in my tree farm were gone. But chests near my spawn were untouched. I went to another side and put loot in there and the same thing happened. For now I'm going to stop playing this game until it gets fixed.