Quick question? Are the version number represent the amount of content being finished? So for example 0.41.100 means 41% of the game done (and 60% to go)
That's a good way to look at it. Considering the completion is around that percentage.
But the version numbering for Uni works like this:
First Number: Completed Release
Second: Major Update (Heavy amount of new scenes, writing etc.)
Third: Minor Update (Bug fixes, sprite fixes, missing images, QoL, etc)
Version numbering really comes down the developer and there is really no set standard for it.