If you are using Unity for example, Unity Windows releases have a certain structure of folders and files. "Looks and feels like a game" sort of speaking, like this one. (sorry if the image looks extremely large :D looks ok in my desktop)
ah I see. I've always used an engine called clickteam fusion, which has always had strange issues with virus detection software that sort of thing. I intend to switch to something a little more ubiquitous soon. Thanks for the info!