Thank you so much for playing and for your thoughtful feedback! I'm always looking for ways to improve gameplay!
Alyssa actually does know the secret identities of all of the team members because Layna/Yieldstrike accidentally revealed them to her. If you decide to give the game another go and stick around until the end, Alyssa's goals might become a bit clearer ;)
That said, it is helpful to know what I can improve in terms of clarity in the story, and I will keep this in mind for future updates!
Thanks again for taking the time to share your thoughts!