This is normal. The game is split into separate distributables in order to stay under the 2 gb limit. Since this is a kinetic novel, none of your choices affect the story.
Once you finish playing part 1, start part 2. After that, play part 3. Saves between the parts are incompatible (they are on different days), so just start a new game and select the "start" of that part.
The gallery and replay only has content for that part (otherwise it would eventually take up the entire 2 gb limit and leave no space for new story).