I'll just say one thing first, the base of the story is awesome and I really hope you continue to build off of it! I didn't completely understand what was going on, but I came up with a theory of my own. I'm not sure if it's correct, even the slightest bit, but I gave it my best thought. Are you planning on putting more into this or is it a stand alone mystery? Did I miss something important?
Just a few questions I had, but either way, it was totally awesome, even if I didn't grasp what it was completely, it was cool to draw my own idea from it. Maybe that's the whole point.
If you'd like to view my thoughts, I made a video on it:
Thanks for creating something so intriguing! :D