Are there a few channels that are giving input during the calibrate controller procedure, and some that does not? (You should see the movement of each stick represented by one of the little circles above the OK button)
In that case you can check:
- Make sure you don't have any other joysticks/controllers connected, that might cause a conflict.
- Make sure you uninstall vJoy and Smartpropoplus if you have them. Their driver messes with things when connecting via USB.
- Make sure you have "Heli" selected as model type on your radio.("Plane" often doesn't work very well).
- Perhaps you can remap the output channels (in the menu of the transmitter) so that it sends to another channel.