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I fixed the weird glitches that happened on the Optimization branch yesterday. (I also upgraded the project to Unity 2018.2 and reorganized the scripts a little bit). It's all merged into the master branch at the moment, if you're still interested. Thanks again for confirming the TextMesh instructions, they worked for me as well.

The problem was that I had forgotten to also reset the MuscleJoint rigidbodies when resetting the bones, which caused them to disconnect and glitch out.

I'm now working on the next big release with tons of new features that I'm very excited about.  

Thanks! Just gave that newest master branch a try  and it works great. 

And there is no longer a need to merge the "evolution-core" branch for the compile. Everything will be in evolution from now on?

Looking forward to the next release!

Yes, I removed the evolution-core submodule and re-integrated all the scripts into the same repository. Man, was that submodule annoying to work with.

The only reason why the "evolution-core" submodule existed at all was because I played around with making a "true" 3D version of this simulator (possibly with AR integration) in a separate app and I wanted to reuse most of the existing scripts. The submodule allowed me to do just that but it was still a significant overhead. If I ever decide to make a 3D version of this, I'll just add it to the current app (it's probably not going to happen though).