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You said "I just updated...".  Does that mean you downloaded a newer version of Autonauts, or does that mean you just loaded a recent save file, or does that mean something else? 

If you downloaded a newer version, which version did you just download?  If you think that the newer version might not have gotten installed correctly, I suggest that you read this posting for instructions on installing the downloaded file:  https://itch.io/post/475749

If you just loaded a recent save file, perhaps that save file is broken somehow.  I suggest that you try loading an earlier save file that you had loaded before and which you were able to use without this problem.

If you mean something else, please clarify what happened. 

I also suggest that you take a screenshot of your game while you are pointing at the ‘unusable tree soil’.  You can take a screenshot by pressing the "PrtScr" key - you might need to also hold down another key such as "Shift" or "Ctrl" or "Alt" or "Fn".  You can then open Microsoft Paint and paste your screenshot there, and then save the file in Paint with extension .png.  You can then come back here, enter your reply, and click on the "Add Image" icon just above your reply which will allow you to upload the .png file.

Once you have given us some more information, we may be able to help you more.

I’ll get back to you on that screenshot. I updated from 10.0 a few days prior. I didn’t have any other saves since to save storage I just   Overrided the save each time so I don’t have a backup... I’ll also check to make sure the files are installed correctly

Just for your information, the game automatically creates save files for you each time you see a piggy bank shown in the bottom-right corner.  Those save files are kept in a folder with a name like C:\Users\Owner\Documents\yourname\Autonauts\Autosaves, as shown below.

Oh okay