I finally make some time to play further. Now that I got my new body, I'm finally using the new name I chose. Problem solved. Sorry for any trouble I brought, and thanks for the great work.
It's because Isaac can no longer be classified as an audience self-insert. Arguably, he never was. The original intent was to let players fully immerse themselves in his situation by letting them choose his name both pre and post Transition, but since he's got a defined personality, backstory and storyline, it's far better to give him a clearly defined pre-Transition name also.