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ok thanks for the heads up i will remove bridges also i need to reset all the trade routes as the boats are all suck now going back and forth in an area my next question is once a bridge is built does that permanently cut off that water way as even with the bridge gone ships wont travel over the shallows any more? 

The boats should be able to pass over the shallows once the bridges are gone. The route the boats need to take might be too difficult of a problem for the pathfinder to solve. It does a bit of guessing to save on performance.

Perhaps try relocating the trade ports so they have a clearer path.

(-1)

why not just let boats go under bridges that would be a clever thing to add to the game with all the broken things you added recently  and give happiness back to monuments