Does this build require a full restart? I tried loading a save from shortly before the end on the old build and another from a little bit earlier, and both of them end at the same place. I'm not sure how far back I'd need to go.
Oh, I noticed what the problem was when I tried to run it again just now. I had assumed the newer version would be larger, so I had opened the larger version, but 0.02 is actually smaller than 0.01 somehow. It is working correctly.