I ran into this too, starting a new game with 0.9. I was wondering about that...
No, I wasn't aware of Godhood Chronicles until .9...unless you mean a file that I've loaded from, then yes I would be. I save the first time I'm able to (just before choosing a Diviner) then go on from there. I tend to be fairly "save when I can" so...
Unrelated to this, but I REALLY should have realized this game sooner, since you guys did Ramen Prince!