Hi, if the automatic stick detection gets it wrong during the Calibrate Controller procedure, keep an eye on the little circles above the OK button. You can manually click on the little circle that you see is the correct one for each stick (instead of clicking 'OK')
That should at least get the sticks recognized in the correct order.
However, if you get weird "jumping" of the positions, you might need to adjust the endpoints on the controllers to go from 0 to +100 (instead of (-100 to +100) similarly to what is described in the Taranis setup document, not sure if that is possible on the Beemotes.