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Hi Byron. I only use Unity, so I might not be the best person to answer your question. Any engine that can load sprite sheets should be able to use them just fine. However, I think you manually have to slice the sprites. Just to confirm, are you asking about this problem or the color variations?  If it's the slicing problem, would having each sprite separately would help? I'll try to do that, but it depends how fast you need the ships.