Not in you want to have all files ine the one folder - not really.
You call your CC exported file and name as 'app.exe' and to make it clearer you can rename the binary file needed to access the new API's as the same name as your game - should help, or better create a shortcut pointing to your binary file in the main area but put your app.exe in a folder one level down so less chance of clicking the wrong exe.