Oh? I think what you're referring to might be intentional, but if it looks "wrong" I'll have to change it.
The creation process was to 'record' a pattern in realtime, then go back through and adjust every single puck, so if there are two pucks that are not in alignment, it's very likely to be intentional (unless I missed something?).
If you press tab, you can enter the edit mode and move stuff around with the mouse. Maybe you could get a screenshot of what you mean? You can press space to pause/play. I completely understand if you don't have time to do that - Either way, I'll look into it.
Edit: Actually now that you mention it, do you mean like this?
