My persistent actions are at 96.99%, even after investigating a name I got from crates. Seems like I've done nearly everything else that can be done. Are there any other persistent actions that are well hidden?
If your save game was originally started before v0.3, your save might have a minor glitch which makes it think a few of the first-loop actions are incomplete when they're not. It could be something else, but someone else who had this issue had the same %age completion. This'll be fixed in the next patch.
Thanks! I started playing a couple days ago, so it should have all been v0.4.x. But I do tend to browse a lot of games on Itch, especially in the "Recommended for You" section which is where I saw this, so it's not impossible that I might have clicked it once, didn't play, forgot about it, but still ended up with an earlier save.