I tested on MV version 1.6.3. Just to be safe, I made a brand new project with mv3d, srpg, and this plugin.
I'm not sure why the cursor would be misplaced for you, but this plugin doesn't do anything to manipulate the cursor or confirm key. Even before I made this, the cursor appeared in the right position, and the confirm key technically worked. Just the floor tiles were invisible.
If the issue persists without this plugin being on, then I believe that will help narrow down the root of it.