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This is awesome but it only works on Dolphin for me. The same iso doesn't work on my Wii using USBLoaderGX. It crashes when the Nintendo logo comes up.
Are there certain options I should use?

The full game link is down. Demo is pretty nice though.

All good, I never have an issue with controllers like this. It was surprising to me how even the older version doesn't work now.
Thanks for working on a fix earlier though, I'm sure that still helped others.

I just tried it and the issue's still happening the exact same even after deleting everything including the files in AppData and reinstalling.
Edit: Tried my Logitech F310 in both modes and neither D or Xinput mode worked either.
Edit edit: Tried it with my Xbox controller too and same thing. Cleared the settings file after every attempt. Went back to the last version and that doesn't work either now so it might just be something on my end.

Deleting that file didn't work, or closing Steam.  I don't have a Mayflash adapter either.
It worked in the last version just fine though. Not sure why I didn't mention that in the OP.

I'm using the "HORI Nintendo Switch Battle Pad Gamecube Style Controller".

When I press anything on my controller on this screen the game freezes and never starts up.

Edit: Looked into this further and when I use the keyboard it doesn't freeze, and trying to rebind controls in the CSS goes through all options near instantly, not letting me rebind anything. Pressing anything on my controller freezes the game still at this point.