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why... can I not find my script. 
I mean, if I go through the files on my computer, I can clearly see the script in the game folder, but if I look for it with this tool, it just doesn't show it. Am I the dumb one? How do I fix this. (Renpy script btw)

The tool doesn't need to see a Ren'Py script. It takes a Twine html file as an input and a directory as a place to output the generated Ren'Py file. At no point will it need to point to an existing Ren'Py script.