Heya, I've been following this off and on a bit and noticed a couple issues on this return trip.
*Possible spoilers for newer players*
I continued a save from 0.7.2r3-pc (currently on 0.7.4r3-pc, so maybe this is fixed already on the patreon version), which worked fine till I completed Lyriel's personal story. After that, every "day" in either the afternoon or evening Lyriel acts as if I have not 'visited' in a long time. It got to the point where other stories could not be advanced as she would interrupt any movement, and the game is pretty much soft locked due to it. Granted, could kick her to the curb and lose points, but I gather thats not the intended rate of appearance. The main story was right before the first ether string snap, if that helps at all.
After that I deleted any old saves and started up fresh, which then I caught one other minor bug. When first meeting Naomi I had both x1 rare ingredients and whiskey to proc both scenes, but after they finished, I noticed my inventory had x2 of each; meaning they were added instead of reduced.
Beyond that thanks for your work, its been fun to dive into now and again.