Thanks for describing what you meant in more detail. The scenes mentioned are a part of the plot that is being changed at the moment and there are no plans to include them un the updated version. They will only be present as a part of legacy chapters available in the optional Extra menu, so they will be skippable. This will happen already in the coming patch 0.11A. In general, we will aim to not include such stuff in future, and change of the scene with Minerva at the start of the game shows our intentions for future content.