There was an issue with how the transfer compared your progress to the Task List, but it should be resolved for v0.11.
Do you mind sharing your save file so I can investigate? I'll need both the numbered save and global.rmmzsave.
Can I share on email? If yes can I See your email?
I've sent you a fixed save.
For anyone else reading through, the issue in question has indeed been fixed for v0.11, and has to do with using the skip function for the floor repair quest.
