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(+1)

After I run the wadsmoosh.exe I can't seem to find the PK3 it's supposed to create. Should it be in the base folder? 

Yes, all the IWADs are in the right place so I don't think that's the issue.

Do you see any errors in your wadsmoosh.log after running?

(-1)

Look closer. It's in the same folder as wadsmoosh.exe and can hide in plain sight with how much is already in there

(2 edits)

This was happening to me; I had to perform a search on the entire C:\ drive to find where they were being put.

Try looking in C:\Users\<windows account>\AppData\Local\VirtualStore\Program Files (x86) and you should see the name of whatever folder you created to house the wadsmoosh files


edit: right click the .exe, goto properties, select the compatibility tab, and check "run this program as an administrator". that should allow the program to write to the folder it's in.