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3/4 of all the available save slots?
have you tried completely reinstalling the game and erasing the AppData\Local\MANTIS folder?

(+1)

Yup, almost every available save slot.

I erased this appdata folder and unzipped again the whole original folder. The games runs smoothly, if I don't save often. I am in 20+ days when it started lagging again.

Also, there were no install process at all, just running the game.exe and the game starts immediately.