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Wait, does the game keep track of different types of stone whereas the player only sees "stone" as a single resource? In that case, it would be nice to be able to pick the type of stone to be dismantled in the atom manipulator. Since I almost always have way more stone than disintegration capacity, I'd obviously like to process the best batch.

They aren't different types of stone, there's only one type of stone which is made up of many elements. So there is no stone that is purely 100% osmium unless the planet is made entirely out of osmium (which doesn't exist in the game). So "picking the type of stone to be dismantled" would make less sense, but I agree there needs to be better ways of getting specific atoms from stone