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Yes, the whole folder that is created by the "build" is necessary to run the game. Just make a ZIP file out of the folder and upload it.

Someone else here had the same problem and reuploaded his game (which was then linked as "late submission"), but I see a chance for you to fix this. 

I tried to reupload it through the dashboard but there is a message saying I can't upload anything new until the jams over. Oh well.