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Yeppers! I beat the level before I tried hunting for bugs. If you stun the blue dino and collect it, then stun another dino while holding the blue dino you collect the new dino and the blue dino goes into one of the three slots of your inventory. If you get rid of what's on hand then you are back to holding blue dino, but then the boat it's supposed to be placed on doesn't register it, even if you stun blue dino again and once more place it on the boat.

I found the mission objective very intuitive, actually. Well done with such an open world and no in-game explanation!