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Hmm I have no idea what's going on. I downloaded the latest build and I saw the bottom ending when I played through it. 

(+1)

Maybe it is because i finished the game and got the top ending first?

The only thing the game saves is your victory or loss. Nothing else, I'm confused.

is there a way to reset the game? Maybe I can get it to trigger if I reset it.

You can mess with the save files if you want. They're in the local files, that's all I'll say. Spoilers.