Thanks for the report and example! Looking into it, I've found some issues happening when loading certain combinations of departure routes, causing incorrect lists of waypoints. I'll release a new version very soon.
That's right. I just released another small update to fix some issues with the custom airports. When things work as expected, I'll update the android version as well in a few days (updates to the Play store take a bit more time, and too frequent updates may bother users).
Just one other thing - I noticed that when flights were departing via a departure I made for them from a secondary airport on the first letter of the SiD would appear in-game e.g. WOTAN 1Z was displayed as W?
