Thanks for playing twice and writing this up in order. Your screenshot pinpoints the unreadable seal labels, and the routing confusion is the first issue I am checking. I have also recorded the unclear dock progression and the long wait before older rules matter.
Which browser and device were you using? If you remember which unit or rule led to the unexpected routing penalty, that would help me reproduce it, but no need to replay just to find it. Your two-run report is already useful.