I can't speak for everyone, but from what I've seen, most people are ok with it, mainly because you don't really lose any progress.
For example, let's say you decided to go Lily's love route in an older update. When you play the next version/jump to the latest content in the next, you can select that choice and continue playing based off that decision.
The only real choices that I haven't included when jumping to the latest content, are characters deaths. Which if that's something you're interested in and want to see how the game plays with the girls dying, then I can understand.