A minor inconsistency: If you take your clothes off before having the X-Files dream, you will be clothed during the dream and wake up with clothes on. Then when you go to the wardrobe, you are offered the option to put on clothes.
You also wear clothing when Amy and Sunny are in the living room.
Aside from that stuff, I have a UI complaint: When using a gamepad, it is very easy to veer off onto the patreon button and to visit the website, mucking up the resolution and whatnot. I think dedicating a shoulder button or trigger to activate the hyperlink would fix that.
Another UI suggestion: Time icons for each entry in the quest log, so that the player doesn't have to look at the quest notes. That would save them a bit of real-world time.