No, I was doing the Debris Walker quests, and I got the final quest to go to the bunker before talking to the doc. so when I tried talking to the doc, It wouldn't register that I already had the map from the Colonel already in my inventory.
When you first talk to the doctor, she will ask you to find a map, if you already have a map, you can just talk to her again and tell her you got the map. Again, nothing is soft locked. Here's the trigger for the dialog:
<<if $foundmap is 1 && $findmap is 1>>"[[I got the map]]."<</if>>
$foundmap is set to 1 once you get the map, $findmap is set to 1 after the first time you talked to her. It's two simple variables, as far as I can see, nothing can go wrong where you can't progress the game. Lore wise, you can take it as she is a fast talker and never lets you cut in to tell her you got the map already.