Oh interesting bugs! XD
I'll note these down and fix them
a couple of more:
after the trip to the city ruins with zea, my backpack was missing.
after the bombardment starts, my locker in my room of the strip club was emptied.
sleeping in the sewers somehow made me wake up with my feet on the ceiling.
in the sewers, an NPC requesting the player follow them to initiate sex cannot path to the spot they selected.
not a bug:
i'd suggest redesigning the interior of the headquarters building in the ruins such that invisible walls are not necessary, and that the darkness respected my helmet light as a light.