The first essential update/patch is going up this weekend to fix all these annoying game-breaking bugs: currently making double-sure they are all properly resolved first – but can confirm those two problems are part of the fixes. Almost all these kinds of bugs all came from completing the heavily bugged Mission 3 in a certain (and correct) order which was incorrectly calculating game progression: will explain why that all happened once the update is up. So sorry about this; but thanks for bearing with us!