Mmm… I like puzzles where you have to figure out the rules. But here, despite several attempts, I don't have a single clue about the logic behind! It feels like stumbling upon an end-game secret puzzle without having seen the part supposed to teach you the rules. x) Also it's difficult to understand what's interactive and how to use them. On my first playthrough I didn't get how I was supposed to use the companion computer, and I didn't see that you could interact with the panels and the number-thingy. Not that I know what they're for now. :P
I still must salute the effort. Making that kind of puzzle in a jam is risky! Especially with 3 different endings. The presentation is not bad either! I just wish I understood more this riddle.