Does it have command line support for using frontends (eg. Pegasus, Launchbox)? Either through zRupi.exe or LoopyMSE.exe? If so, can you write out the context?
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I use Pegasus as a front end. Basically I'm just trying to launch the game in full from the front end. For instance, you can usually launch the game directly with something like this (Example from an FM Towns game launched on Tsugaru where {file.path} is defined as the specific game file): C:\Emulation\Tsugaru\Tsugaru_CUI.exe "L:\Console Games\FM Towns\fmtowns" -CD {file.path} -GAMEPORT0 PHYS1 -GAMEPORT1 PHYS2 -SCALE 200 -FULLSCREEN