Thank you for the feedback! Hopefully it wasn't the sorting layers hiding plants from view. If it was the seeds then I would have to adjust their size so they'll be easier to see.
I think it might just be the colors for me. I have mild colorblindness, so the sprites and pixels kinda blended together XP. Maybe you could put a white outline around the sprites? Though I'm not sure how it would affect your style.
I'll keep that in mind for future games. It'll be good to add more accessibility options and higher contrast to my sprites. Thank you for the additional feedback!