Sorry. I was fixing some combat updates yesterday night and forgot about the Legion defeat. Now it will properly end the cycle after a Defiance fight.
Have you completed a cycle yet? If you have, there's a [Reset Cycle] button under settings. If not and this is your first cycle, I can pm you a save for first cycle, just before the final door.
Here, use this save, nearing the end of first cycle: UGD9KJ0T
