Looking into it, thank you for the report!
Are you on the latest patch?
A couple more questions while I dig around the file: Did you accept Lapo's offer or not? Are in you in a romance with Alpheon or someone else? Did you already deal with the nightmares or is the farm issue the one you're tackling first?
(A possible workaround would be loading a savefile in the morning, before meeting Atri if it's your first day, and selecting 'I am relieved' when reflecting on the Refrain).