So I'm not sure if I missed something but I beat the headmistress in the Witches Academy, and the goddess is still telling me that there's a crystal in the academy being misused. Am I missing something? Same question with the quest. I still have the "Dark Presence" quest to search for something south of the Royal City, but I've already dealt with that as well. Unless there's something else down there that I don't know of. Any help would be apricated.
Edit: I just went back to the statue now after running around the Witches Academy, for a couple day cycles and came back to the statue and now the option is gone. However, I'm still confused by the Dark Presence quest if someone has an answer for that.