I'm afraid I lost the source code to this project :(. I might rewrite it in my new game engine though, but it will take a while
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You probably don't have Java installed. You can download and install Java. Or if you dont want that you can wait 2-3 months when I have the new version. It will run out of the box without hassle.
Thanks for your feedback! I made a simulation similar to this one where you can make your own reactions. Click on universe assembler and type something like
p0 p1 -> p4 p5;
That will turn type 0 and 1 into 4 and 5. So you can set all the reactions yourself.
Download it over here:
Thanks for trying it out! In chemistry life every combination of particles had a different radius where they interacted, thats why you don't see those shells anymore. I'll add it as an option in the next version.