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Sorry it was quite a few days ago so I can't remember the exact scenes but I can tell you what I did. I didn't really encounter any glitches pre-exile. Once leaving the town, I focused on doing as many side-quests (character-specific stuff) as I could before the main story. If you start a new save and do this, you'll probably encounter it too. (all of the glitched scenes I mentioned come from the character-specific stuff) Though it could be possible I may have updated the game wrong at some point (idk)
EDIT: I know the late Cleos stuff with the little girl happened for me before the red suit first appeared in the main story. And I could do the later Estia stuff before the guild lady moves into our home. (Sorry I'm bad with names) These are only a few examples I could remember.
I've done all of that and tried sleeping for literal weeks after and can't trigger it. I've literally captured every available area and have enough for every potion. Maybe it's a bug? (Update: just realized i didn't finish the emma event after checking the comments and now it triggered, all is well :) )