I think I can help you a bit with your problem. If you are in the game, one of the options outside of combat is "ME". Click that, then "Encounters", then "Restrictions". Within there, you should be able to turn off certain flags such as choking. You can also reinforce this by changing "Goal Weights", also under the "Encounters" grouping, setting things you don't want to happen to 0% and reducing things you don't want to happen often.
From my understanding, this is a relatively new feature. Not everything has a flag yet and certain scenes, especially involving story NPCs, can override your choices, but this should make it a bit better. The "heal" option in the debug menu might also remove wounds, alongside reducing pain to 0 and increasing stamina to max, but I haven't tested this yet so I can't say for certain.