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RpgmakerWeb stated that the winners will become sample games. Will those sample games have their source files accessible to the people  who download them?

A lot of assets/plugins/sounds/music allow commercial use, but do not allow redistribution. I believe there is a legal issue in these cases if said assets aren't packaged as encrypted files.

Hey there! The winning games will be distributed for free on RPGMakerWeb, as well as Steam. Because of that, you need to make sure that the assets you use can be utilized in that way. Having said that, please package them as encrypted files, as Komodo is looking to share the game, not the source files. (I know that was a very round-a-bout way to answer your question, but I wanted you to fully understand the logic behind it.) :-)