Cheers, Kratkila!
Can't have ups without downs.
Kicking the organization's ass is currently in progress and will happen in the coming versions as an optional route.
The game has been playtested many times by various people so I have no idea what happened, it could be because you're running an old save but maybe I missed something? In any case, I'll look into it.
See you in the next version! ^_^