Okay, I understand.
For everyone interested in a fix:
Open the file "script.rpy" (not "script.rpyc") in the game sub folder in your favourite text editor. Search for "$ points += 1" and move that lines above the lines containing "jump ...". Be sure not to change any indention or other white spaces.
If your favourite text editor is Notepad++ enable regular expression in the search/replace window and use
^(\s+jump \w+\n)(\s+\$ points \+= 1\n)
in the search field and
\2\1
in the replace field. That should fix all lines :)